Status
Summary statistics for the Trichoderma asperellum TR356
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 35.39 |
| Sequencing read coverage depth | 120X |
| # of contigs | 2369 |
| # of scaffolds | 2369 |
| # of scaffolds >= 2Kbp | 2369 |
| Scaffold N50 | 438 |
| Scaffold L50 (Mbp) | 0.02 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.20, 0.13, 0.12 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | transcripts | 21727 | 19629 | 90.3% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1691 | 1452 |
| transcript | 1537 | 1308 |
| exon | 571 | 350 |
| intron | 93 | 70 |
| description: | ||
| protein length (aa) | 441 | 358 |
| exons per gene | 2.69 | 2 |
| # of gene models | 12320 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Kubicek CP, Steindorff AS, Chenthamara K, Manganiello G, Henrissat B, Zhang J, Cai F, Kopchinskiy AG, Kubicek EM, Kuo A, Baroncelli R, Sarrocco S, Noronha EF, Vannacci G, Shen Q, Grigoriev IV, Druzhinina IS
Evolution and comparative genomics of the most common Trichoderma species.
BMC Genomics. 2019 Jun 12;20(1):485. doi: 10.1186/s12864-019-5680-7
Kubicek CP, Steindorff AS, Chenthamara K, Manganiello G, Henrissat B, Zhang J, Cai F, Kopchinskiy AG, Kubicek EM, Kuo A, Baroncelli R, Sarrocco S, Noronha EF, Vannacci G, Shen Q, Grigoriev IV, Druzhinina IS
Evolution and comparative genomics of the most common Trichoderma species.
BMC Genomics. 2019 Jun 12;20(1):485. doi: 10.1186/s12864-019-5680-7
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
