Info • Trichoderma asperelloides T203 v1.0

Status

[October 2021] The genome and transcriptome sequences of Trichoderma asperelloides T203 were not determined by the Joint Genome Institute (JGI) but were provided by Oded Yarden on September 7, 2021. To allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. The JGI Annotation Pipeline was used to generate structural and functional annotations.

Genome Assembly
Genome Assembly size (Mbp) 36.27
Sequencing read coverage depth 100x
# of contigs 391
# of scaffolds 354
# of scaffolds >= 2Kbp 303
Scaffold N50 35
Scaffold L50 (Mbp) 0.29
# of gaps 37
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.76, 1.01, 0.93


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTClusters 24366 24343 99.9%
Ests est.fasta 86333696 86325759 99.99%


Gene Models FilteredModels1
length (bp) of: average median
gene 1949 1682
transcript 1770 1513
exon 616 372
intron 97 71
description:
protein length (aa) 489 404
exons per gene 2.87 2
# of gene models 11166


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Gortikov M, Wang Z, Steindorff AS, Grigoriev IV, Druzhinina IS, Townsend JP, Yarden O
Sequencing and Analysis of the Entire Genome of the Mycoparasitic Bioeffector Fungus Trichoderma asperelloides Strain T 203 (Hypocreales).
Microbiol Resour Announc. 2022 Feb 17;11(2):e0099521. doi: 10.1128/mra.00995-21

Funding

This project was not sequenced at the JGI.