Status
The genome sequence and gene models of Trichoderma atrobrunneum ITEM 908 were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Oct 5, 2018 and the gff3 file provided by the authors. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Summary statistics for the Trichoderma atrobrunneum ITEM
908 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 39.15 |
| Sequencing read coverage depth | 60x |
| # of contigs | 847 |
| # of scaffolds | 847 |
| # of scaffolds >= 2Kbp | 540 |
| Scaffold N50 | 90 |
| Scaffold L50 (Mbp) | 0.13 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.55, 0.55, 0.52 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1782 | 1392 |
| transcript | 1442 | 1182 |
| exon | 457 | 250 |
| intron | 159 | 73 |
| description: | ||
| protein length (aa) | 481 | 394 |
| exons per gene | 3.15 | 3 |
| # of gene models | 8637 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Fanelli F, Liuzzi VC, Logrieco AF, Altomare C
Genomic characterization of Trichoderma atrobrunneum (T. harzianum species complex) ITEM 908: insight into the genetic endowment of a multi-target biocontrol strain.
BMC Genomics. 2018 Sep 11;19(1):662. doi: 10.1186/s12864-018-5049-3
Fanelli F, Liuzzi VC, Logrieco AF, Altomare C
Genomic characterization of Trichoderma atrobrunneum (T. harzianum species complex) ITEM 908: insight into the genetic endowment of a multi-target biocontrol strain.
BMC Genomics. 2018 Sep 11;19(1):662. doi: 10.1186/s12864-018-5049-3
Funding
This project was not sequenced at the JGI.
