Status
Assembly v1 (November 2014) is a minimal draft assembly of Illumina gDNAs using successively Velvet and AllPathsLG.
Summary statistics for the Trinosporium guianense
CBS132537 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 24.23 |
| Sequencing read coverage depth | 140.9x |
| # of contigs | 298 |
| # of scaffolds | 236 |
| # of scaffolds >= 2Kbp | 227 |
| Scaffold N50 | 45 |
| Scaffold L50 (Mbp) | 0.17 |
| # of gaps | 62 |
| % of scaffold length in gaps | 0.2% |
| Three largest Scaffolds (Mbp) | 0.61, 0.51, 0.44 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | JGI_RNA_contigs | 31058 | 30843 | 99.3% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1928 | 1695 |
| transcript | 1706 | 1483 |
| exon | 492 | 294 |
| intron | 92 | 67 |
| description: | ||
| protein length (aa) | 484 | 401 |
| exons per gene | 3.47 | 3 |
| # of gene models | 8062 |
Collaborators
Links
http://genome.jgi.doe.gov/xylonomycetes/
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
