Info • Trichophaea hybrida UTF0779 v1.0

Status

[January 2017] The Trichophaea hybrida UTF0779 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Trichophaea hybrida UTF0779 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 144.18
Sequencing read coverage depth 34.13x
# of contigs 1794
# of scaffolds 1794
# of scaffolds >= 2Kbp 1765
Scaffold N50 282
Scaffold L50 (Mbp) 0.15
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.98, 0.61, 0.58


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 61419 53942 87.8%
Ests est.fasta 123397551 115596597 93.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1558 1267
transcript 1370 1097
exon 409 257
intron 82 59
description:
protein length (aa) 399 301
exons per gene 3.35 3
# of gene models 13308


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Miyauchi S, Kiss E, Kuo A, Drula E, Kohler A, Sánchez-García M, Morin E, Andreopoulos B, Barry KW, Bonito G, Buée M, Carver A, Chen C, Cichocki N, Clum A, Culley D, Crous PW, Fauchery L, Girlanda M, Hayes RD, Kéri Z, LaButti K, Lipzen A, Lombard V, Magnuson J, Maillard F, Murat C, Nolan M, Ohm RA, Pangilinan J, Pereira MF, Perotto S, Peter M, Pfister S, Riley R, Sitrit Y, Stielow JB, Szöllősi G, Žifčáková L, Štursová M, Spatafora JW, Tedersoo L, Vaario LM, Yamada A, Yan M, Wang P, Xu J, Bruns T, Baldrian P, Vilgalys R, Dunand C, Henrissat B, Grigoriev IV, Hibbett D, Nagy LG, Martin FM
Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits.
Nat Commun. 2020 Oct 12;11(1):5125. doi: 10.1038/s41467-020-18795-w

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.