Info • Trichoderma longibrachiatum MK1 v1.0

Status

[October 2018] The Trichoderma longibrachiatum MK1 genome was sequenced with Illumina technology, assembled sequentially with Velvet and AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Trichoderma longibrachiatum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.34
Sequencing read coverage depth 140.795251752x
# of contigs 390
# of scaffolds 375
# of scaffolds >= 2Kbp 361
Scaffold N50 61
Scaffold L50 (Mbp) 0.16
# of gaps 15
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.81, 0.59, 0.55


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 45312 39885 88.0%
Ests est.fasta 225871821 222723714 98.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1892 1616
transcript 1714 1457
exon 603 375
intron 99 72
description:
protein length (aa) 481 391
exons per gene 2.84 2
# of gene models 10046


Collaborators

Mateo Lorito - Università di Napoli Federico II

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.