Info • Trichophyton mentagrophytes TIMM 2789

Status

The genome sequence and gene models of Trichophyton mentagrophytes TIMM 2789 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.


Genome Assembly
Genome Assembly size (Mbp) 24.07
Sequencing read coverage depth
# of contigs 16646
# of scaffolds 16543
# of scaffolds >= 2Kbp 465
Scaffold N50 84
Scaffold L50 (Mbp) 0.08
# of gaps 103
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.57, 0.40, 0.35


Gene Models ExternalModels
length (bp) of: average median
gene 1741 1459
transcript 1548 1287
exon 491 252
intron 92 68
description:
protein length (aa) 516 429
exons per gene 3.15 3
# of gene models 7860


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Alshahni MM, Yamada T, Yo A, Murayama SY, Kuroda M, Hoshino Y, Ishikawa J, Watanabe S, Makimura K
Insight into the draft whole-genome sequence of the dermatophyte Arthroderma vanbreuseghemii.
Sci Rep. 2018 Oct 11;8(1):15127. doi: 10.1038/s41598-018-33505-9

Funding

This project was not sequenced at the JGI.