Status
May 2014. The genome of Trichosporon oleaginosus was sequenced using Illumina technology and subsequently assembled together with AllPathsLG version R47710, (Gnerre et al., 2010).
Summary statistics for the Trichosporon oleaginosus
IBC0246 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 19.84 |
| Sequencing read coverage depth | 115.8x |
| # of contigs | 196 |
| # of scaffolds | 180 |
| # of scaffolds >= 2Kbp | 174 |
| Scaffold N50 | 29 |
| Scaffold L50 (Mbp) | 0.22 |
| # of gaps | 16 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.65, 0.62, 0.60 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | Assembled_RNAseq_reads | 21147 | 20402 | 96.5% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1749 | 1500 |
| transcript | 1557 | 1309 |
| exon | 418 | 238 |
| intron | 73 | 41 |
| description: | ||
| protein length (aa) | 453 | 367 |
| exons per gene | 3.72 | 3 |
| # of gene models | 8322 |
Collaborators
- Minou Nowrousian - Ruhr-Universität Bochum, Germany
- Joey Spatafora - Oregon State University, USA
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Kourist R, Bracharz F, Lorenzen J, Kracht ON, Chovatia M, Daum C, Deshpande S, Lipzen A, Nolan M, Ohm RA, Grigoriev IV, Sun S, Heitman J, Brück T, Nowrousian M
Genomics and Transcriptomics Analyses of the Oil-Accumulating Basidiomycete Yeast Trichosporon oleaginosus: Insights into Substrate Utilization and Alternative Evolutionary Trajectories of Fungal Mating Systems.
mBio. 2015 Jul 21;6(4):e00918. doi: 10.1128/mBio.00918-15
Kourist R, Bracharz F, Lorenzen J, Kracht ON, Chovatia M, Daum C, Deshpande S, Lipzen A, Nolan M, Ohm RA, Grigoriev IV, Sun S, Heitman J, Brück T, Nowrousian M
Genomics and Transcriptomics Analyses of the Oil-Accumulating Basidiomycete Yeast Trichosporon oleaginosus: Insights into Substrate Utilization and Alternative Evolutionary Trajectories of Fungal Mating Systems.
mBio. 2015 Jul 21;6(4):e00918. doi: 10.1128/mBio.00918-15
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
