Status
The genome sequence and gene models of Trichoderma pleuroti TPhu1 were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Dec 14, 2018 and annotation provided by the authors. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Summary statistics for the Trichoderma pleuroti TPhu1 v1.0
release are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 38.14 |
Sequencing read coverage depth | 41x |
# of contigs | 2355 |
# of scaffolds | 2355 |
# of scaffolds >= 2Kbp | 1644 |
Scaffold N50 | 259 |
Scaffold L50 (Mbp) | 0.04 |
# of gaps | 0 |
% of scaffold length in gaps | 0.0% |
Three largest Scaffolds (Mbp) | 0.22, 0.20, 0.17 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 1722 | 1401 |
transcript | 1506 | 1227 |
exon | 494 | 282 |
intron | 108 | 70 |
description: | ||
protein length (aa) | 502 | 409 |
exons per gene | 3.05 | 3 |
# of gene models | 10610 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Marik T, Urbán P, Tyagi C, Szekeres A, Leitgeb B, Vágvölgyi M, Manczinger L, Druzhinina IS, Vágvölgyi C, Kredics L
Diversity Profile and Dynamics of Peptaibols Produced by Green Mould Trichoderma Species in Interactions with Their Hosts Agaricus bisporus and Pleurotus ostreatus.
Chem Biodivers. 2017 Jun;14(6):. doi: 10.1002/cbdv.201700033
Marik T, Urbán P, Tyagi C, Szekeres A, Leitgeb B, Vágvölgyi M, Manczinger L, Druzhinina IS, Vágvölgyi C, Kredics L
Diversity Profile and Dynamics of Peptaibols Produced by Green Mould Trichoderma Species in Interactions with Their Hosts Agaricus bisporus and Pleurotus ostreatus.
Chem Biodivers. 2017 Jun;14(6):. doi: 10.1002/cbdv.201700033
Funding
This project was not sequenced at the JGI.