Info • Trichoderma pleuroti TPhu1


The genome sequence and gene models of Trichoderma pleuroti TPhu1 were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Dec 14, 2018 and annotation provided by the authors. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.

Summary statistics for the Trichoderma pleuroti TPhu1 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.14
Sequencing read coverage depth 41x
# of contigs 2355
# of scaffolds 2355
# of scaffolds >= 2Kbp 1644
Scaffold N50 259
Scaffold L50 (Mbp) 0.04
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.22, 0.20, 0.17

Gene Models ExternalModels
length (bp) of: average median
gene 1722 1401
transcript 1506 1227
exon 494 282
intron 108 70
protein length (aa) 502 409
exons per gene 3.05 3
# of gene models 10610

Genome Reference(s)


This project was not sequenced at the JGI.