Status
v.2.0 (October 18, 2006): The assembly release version 2.0 combines JAZZ assembly of whole genome shotgun reads with additional reads provided by the finishing group at the Los Alamos National Laboratory Branch of the Joint Genome Institute. This additional information has reduced the overall number of scaffolds from 1094 (v1.0) to 89 (v2.0). In addition, the number of scaffolds that make up half of the 34.1 Mb of the genome has reduced to 9 in v2.0 versus 15 in v1.0. Finishing work continues at JGI/LANL.
The current draft release, version 2.0, includes a total of 9,129 gene models predicted and annotated using the JGI annotation pipeline. Community-wide manual curation of gene models is on-going.
Collaborators
- US Department of Energy Joint Genome Institute (JGI)
- Architecture et Fonction des Macromolecules Biologique au CNRS
- Dartmouth College
- Forest Products Laboratory at University of Wisconsin
- Fungal Genomics Laboratory at NCSU
- Genencor International
- Laboratory of Wood Biotechnology at Royal University of Technology
- Novozymes Biotechnology Inc.
- Pacific Northwest National Laboratory
- TU Vienna Institute of Chemical Engineering
- VTT Technical Research Centre
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Martinez D, Berka RM, Henrissat B, Saloheimo M, Arvas M, Baker SE, Chapman J, Chertkov O, Coutinho PM, Cullen D, Danchin EG, Grigoriev IV, Harris P, Jackson M, Kubicek CP, Han CS, Ho I, Larrondo LF, de Leon AL, Magnuson JK, Merino S, Misra M, Nelson B, Putnam N, Robbertse B, Salamov AA, Schmoll M, Terry A, Thayer N, Westerholm-Parvinen A, Schoch CL, Yao J, Barabote R, Nelson MA, Detter C, Bruce D, Kuske CR, Xie G, Richardson P, Rokhsar DS, Lucas SM, Rubin EM, Dunn-Coleman N, Ward M, Brettin TS
Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina).
Nat Biotechnol. 2008 May;26(5):553-60. doi: 10.1038/nbt1403
Martinez D, Berka RM, Henrissat B, Saloheimo M, Arvas M, Baker SE, Chapman J, Chertkov O, Coutinho PM, Cullen D, Danchin EG, Grigoriev IV, Harris P, Jackson M, Kubicek CP, Han CS, Ho I, Larrondo LF, de Leon AL, Magnuson JK, Merino S, Misra M, Nelson B, Putnam N, Robbertse B, Salamov AA, Schmoll M, Terry A, Thayer N, Westerholm-Parvinen A, Schoch CL, Yao J, Barabote R, Nelson MA, Detter C, Bruce D, Kuske CR, Xie G, Richardson P, Rokhsar DS, Lucas SM, Rubin EM, Dunn-Coleman N, Ward M, Brettin TS
Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina).
Nat Biotechnol. 2008 May;26(5):553-60. doi: 10.1038/nbt1403
Funding
This work was performed under the auspices of the US Department of
Energy's Office of Science, Biological and Environmental Research
Program and the by the University of California, Lawrence Livermore
National Laboratory under Contract No. W-7405-Eng-48, Lawrence
Berkeley National Laboratory under contract No. DE-AC03-76SF00098
and Los Alamos National Laboratory under contract No.
W-7405-ENG-36.
