Info • Trichoderma reesei CBS999.97 MAT1-2

Status

The genome sequence and gene models of Trichoderma reesei CBS999.97 MAT1-2 were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Jan 29, 2020 and annotation provided by the authors. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Genome Assembly
Genome Assembly size (Mbp) 34.32
Sequencing read coverage depth 127x
# of contigs 7
# of scaffolds 7
# of scaffolds >= 2Kbp 7
Scaffold N50 3
Scaffold L50 (Mbp) 5.26
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 6.82, 6.06, 5.26


Gene Models ExternalModels
length (bp) of: average median
gene 2280 1976
transcript 2075 1781
exon 712 436
intron 96 74
description:
protein length (aa) 492 408
exons per gene 2.91 3
# of gene models 11087


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Li WC, Lee CY, Lan WH, Woo TT, Liu HC, Yeh HY, Chang HY, Chuang YC, Chen CY, Chuang CN, Chen CL, Hsueh YP, Li HW, Chi P, Wang TF
Trichoderma reesei Rad51 tolerates mismatches in hybrid meiosis with diverse genome sequences.
Proc Natl Acad Sci U S A. 2021 Feb 23;118(8):. doi: 10.1073/pnas.2007192118

Li WC, Liu HC, Lin YJ, Tung SY, Wang TF
Third-generation sequencing-based mapping and visualization of single nucleotide polymorphism, meiotic recombination, illegitimate mutation and repeat-induced point mutation.
NAR Genom Bioinform. 2020 Sep;2(3):lqaa056. doi: 10.1093/nargab/lqaa056

Funding

This project was not sequenced at the JGI.