Status
v1.0: This draft release was produced using Illumina data (2x150 200bp, 2x76 3kb, 2x76 16kb) and assembled using the AllPathsLG assembler.
Summary statistics for the Trichoderma reesei RUT C-30
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 32.69 |
| Sequencing read coverage depth | 47.6 |
| # of contigs | 320 |
| # of scaffolds | 182 |
| # of scaffolds >= 2Kbp | 96 |
| Scaffold N50 | 10 |
| Scaffold L50 (Mbp) | 1.02 |
| # of gaps | 138 |
| % of scaffold length in gaps | 0.5% |
| Three largest Scaffolds (Mbp) | 3.60, 2.52, 1.89 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | ESTs | 42916 | 30887 | 72.0% |
| Other | GenBankGenes | 69 | 67 | 97.1% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1696 | 1418 |
| transcript | 1476 | 1230 |
| exon | 512 | 290 |
| intron | 119 | 76 |
| description: | ||
| protein length (aa) | 469 | 386 |
| exons per gene | 2.88 | 3 |
| # of gene models | 9852 |
Collaborators
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Koike Hideaki, Aerts Andrea, LaButti Kurt, Grigoriev Igor V., Baker Scott E.
Comparative Genomics Analysis of <i>Trichoderma reesei</i> Strains
Industrial Biotechnology. 2013;9(6):352-367. doi: 10.1089/ind.2013.0015
Koike Hideaki, Aerts Andrea, LaButti Kurt, Grigoriev Igor V., Baker Scott E.
Comparative Genomics Analysis of <i>Trichoderma reesei</i> Strains
Industrial Biotechnology. 2013;9(6):352-367. doi: 10.1089/ind.2013.0015
Links
Reference:
Koike H., Aerts A, LaButti K, Grigoriev IV, Baker SE (2013) Comparative genomics analysis of Trichoderma reesei strains. Ind. Biotech. 9(6):352-367.
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
