Status
[January 2025] The genome sequence of Trichoderma sp. AM6 was provided by Avishek Banik and annotated using the JGI Annotation pipeline. The mitochondrial genome was also assembled and is available in the download section. The transcriptome data used to support the genome annotation was retrieved from Trichoderma sp. aff zeloharzianum SZMC 28011 (TriTUC5505_1).
| Genome Assembly | |
| Genome Assembly size (Mbp) | 39.91 |
| Sequencing read coverage depth | 100x |
| # of contigs | 446 |
| # of scaffolds | 406 |
| # of scaffolds >= 2Kbp | 279 |
| Scaffold N50 | 20 |
| Scaffold L50 (Mbp) | 0.60 |
| # of gaps | 40 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.67, 1.39, 1.33 |
The transcriptome was retrieved from a different strain, resulting
in a low mapping rate.
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 38169 | 25740 | 67.4% |
| Ests | est.fasta | 33017331 | 30173111 | 91.4% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1820 | 1542 |
| transcript | 1638 | 1382 |
| exon | 545 | 311 |
| intron | 93 | 67 |
| description: | ||
| protein length (aa) | 483 | 392 |
| exons per gene | 3.01 | 3 |
| # of gene models | 13060 |
Collaborators
Avishek Banik - Institute of Health Sciences, Presidency University - West Bengal, India.
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreales Hypocreaceae Trichoderma
- JGI Mycoparasitic Fungi EcoGroup portal
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
