Info • Trichophyton tonsurans CBS 112818

Status

The genome sequence and gene models of Trichophyton tonsurans CBS 112818 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.


Genome Assembly
Genome Assembly size (Mbp) 22.99
Sequencing read coverage depth
# of contigs 1164
# of scaffolds 111
# of scaffolds >= 2Kbp 111
Scaffold N50 20
Scaffold L50 (Mbp) 0.36
# of gaps 1053
% of scaffold length in gaps 2.1%
Three largest Scaffolds (Mbp) 1.20, 0.99, 0.77


Gene Models ExternalModels
length (bp) of: average median
gene 1606 1336
transcript 1415 1155
exon 449 234
intron 91 69
description:
protein length (aa) 470 384
exons per gene 3.15 3
# of gene models 8521


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Martinez DA, Oliver BG, Gräser Y, Goldberg JM, Li W, Martinez-Rossi NM, Monod M, Shelest E, Barton RC, Birch E, Brakhage AA, Chen Z, Gurr SJ, Heiman D, Heitman J, Kosti I, Rossi A, Saif S, Samalova M, Saunders CW, Shea T, Summerbell RC, Xu J, Young S, Zeng Q, Birren BW, Cuomo CA, White TC
Comparative genome analysis of Trichophyton rubrum and related dermatophytes reveals candidate genes involved in infection.
mBio. 2012;3(5):e00259-12. doi: 10.1128/mBio.00259-12

Funding

This project was not sequenced at the JGI.