Status
The genome sequence and gene models of Trichomonas vaginalis were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on May 29, 2018. In order to allow comparative analyses with other genomes sequenced by the JGI, a copy of this genome is incorporated into the JGI Genome Portal. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Summary statistics for the Trichomonas vaginalis G3
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 176.42 |
| Sequencing read coverage depth | |
| # of contigs | 72950 |
| # of scaffolds | 64769 |
| # of scaffolds >= 2Kbp | 5258 |
| Scaffold N50 | 1020 |
| Scaffold L50 (Mbp) | 0.03 |
| # of gaps | 8181 |
| % of scaffold length in gaps | 0.5% |
| Three largest Scaffolds (Mbp) | 0.58, 0.50, 0.50 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 931 | 657 |
| transcript | 931 | 657 |
| exon | 930 | 657 |
| intron | 198 | 74 |
| description: | ||
| protein length (aa) | 307 | 212 |
| exons per gene | 1.00 | 1 |
| # of gene models | 59679 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Carlton JM, Hirt RP, Silva JC, Delcher AL, Schatz M, Zhao Q, Wortman JR, Bidwell SL, Alsmark UC, Besteiro S, Sicheritz-Ponten T, Noel CJ, Dacks JB, Foster PG, Simillion C, Van de Peer Y, Miranda-Saavedra D, Barton GJ, Westrop GD, Müller S, Dessi D, Fiori PL, Ren Q, Paulsen I, Zhang H, Bastida-Corcuera FD, Simoes-Barbosa A, Brown MT, Hayes RD, Mukherjee M, Okumura CY, Schneider R, Smith AJ, Vanacova S, Villalvazo M, Haas BJ, Pertea M, Feldblyum TV, Utterback TR, Shu CL, Osoegawa K, de Jong PJ, Hrdy I, Horvathova L, Zubacova Z, Dolezal P, Malik SB, Logsdon JM Jr, Henze K, Gupta A, Wang CC, Dunne RL, Upcroft JA, Upcroft P, White O, Salzberg SL, Tang P, Chiu CH, Lee YS, Embley TM, Coombs GH, Mottram JC, Tachezy J, Fraser-Liggett CM, Johnson PJ
Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis.
Science. 2007 Jan 12;315(5809):207-12. doi: 10.1126/science.1132894
Carlton JM, Hirt RP, Silva JC, Delcher AL, Schatz M, Zhao Q, Wortman JR, Bidwell SL, Alsmark UC, Besteiro S, Sicheritz-Ponten T, Noel CJ, Dacks JB, Foster PG, Simillion C, Van de Peer Y, Miranda-Saavedra D, Barton GJ, Westrop GD, Müller S, Dessi D, Fiori PL, Ren Q, Paulsen I, Zhang H, Bastida-Corcuera FD, Simoes-Barbosa A, Brown MT, Hayes RD, Mukherjee M, Okumura CY, Schneider R, Smith AJ, Vanacova S, Villalvazo M, Haas BJ, Pertea M, Feldblyum TV, Utterback TR, Shu CL, Osoegawa K, de Jong PJ, Hrdy I, Horvathova L, Zubacova Z, Dolezal P, Malik SB, Logsdon JM Jr, Henze K, Gupta A, Wang CC, Dunne RL, Upcroft JA, Upcroft P, White O, Salzberg SL, Tang P, Chiu CH, Lee YS, Embley TM, Coombs GH, Mottram JC, Tachezy J, Fraser-Liggett CM, Johnson PJ
Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis.
Science. 2007 Jan 12;315(5809):207-12. doi: 10.1126/science.1132894
Funding
This project was not sequenced at the JGI.
