Status
This genome was sequenced by Anke Burmester, Ekaterina Shelest, Gernot Glöckne et al. in Department of Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology.
Summary statistics for the Trichophyton verrucosum HKI
0517 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 22.54 |
| Sequencing read coverage depth | 3x |
| # of contigs | 523 |
| # of scaffolds | 523 |
| # of scaffolds >= 2Kbp | 523 |
| Scaffold N50 | 94 |
| Scaffold L50 (Mbp) | 0.08 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.27, 0.25, 0.23 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1600 | 1338 |
| transcript | 1468 | 1212 |
| exon | 571 | 329 |
| intron | 86 | 70 |
| description: | ||
| protein length (aa) | 489 | 404 |
| exons per gene | 2.57 | 2 |
| # of gene models | 8024 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Burmester A, Shelest E, Glöckner G, Heddergott C, Schindler S, Staib P, Heidel A, Felder M, Petzold A, Szafranski K, Feuermann M, Pedruzzi I, Priebe S, Groth M, Winkler R, Li W, Kniemeyer O, Schroeckh V, Hertweck C, Hube B, White TC, Platzer M, Guthke R, Heitman J, Wöstemeyer J, Zipfel PF, Monod M, Brakhage AA
Comparative and functional genomics provide insights into the pathogenicity of dermatophytic fungi.
Genome Biol. 2011;12(1):R7. doi: 10.1186/gb-2011-12-1-r7
Burmester A, Shelest E, Glöckner G, Heddergott C, Schindler S, Staib P, Heidel A, Felder M, Petzold A, Szafranski K, Feuermann M, Pedruzzi I, Priebe S, Groth M, Winkler R, Li W, Kniemeyer O, Schroeckh V, Hertweck C, Hube B, White TC, Platzer M, Guthke R, Heitman J, Wöstemeyer J, Zipfel PF, Monod M, Brakhage AA
Comparative and functional genomics provide insights into the pathogenicity of dermatophytic fungi.
Genome Biol. 2011;12(1):R7. doi: 10.1186/gb-2011-12-1-r7
Funding
This project was not sequenced at the JGI.
