Status
The genome sequence and gene models of Trichophyton violaceum CMCC(F)T3l were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 23.37 |
| Sequencing read coverage depth | |
| # of contigs | 787 |
| # of scaffolds | 261 |
| # of scaffolds >= 2Kbp | 59 |
| Scaffold N50 | 5 |
| Scaffold L50 (Mbp) | 1.34 |
| # of gaps | 526 |
| % of scaffold length in gaps | 0.5% |
| Three largest Scaffolds (Mbp) | 4.06, 3.44, 2.01 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1792 | 1497 |
| transcript | 1597 | 1317 |
| exon | 488 | 250 |
| intron | 87 | 68 |
| description: | ||
| protein length (aa) | 532 | 439 |
| exons per gene | 3.27 | 3 |
| # of gene models | 7037 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Zhan P, de Hoog S, Liu W
Draft Genome Sequences of Trichophyton rubrum CMCC(F)T1i and Trichophyton violaceum CMCC(F)T3l by Illumina 2000 and Pacific Biosciences.
Genome Announc. 2017 Sep 28;5(39):. doi: 10.1128/genomeA.00920-17
Zhan P, de Hoog S, Liu W
Draft Genome Sequences of Trichophyton rubrum CMCC(F)T1i and Trichophyton violaceum CMCC(F)T3l by Illumina 2000 and Pacific Biosciences.
Genome Announc. 2017 Sep 28;5(39):. doi: 10.1128/genomeA.00920-17
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Eurotiomycetes Onygenales
Funding
This project was not sequenced at the JGI.
