Status
The genome sequence and gene prediction of Tuber aestivum were not determined by the JGI. The genome sequence and gene prediction were originally done by Genoscope and were delivered to JGI by Emmanuelle Morin and Claude Murat at INRA. Please note that this copy of the genome is not maintained by Genoscope or INRA and is therefore not automatically updated. This copy of the genome does not include the mitochondrial chromosome or genes. The JGI Annotation Pipeline was used to add additional functional annotation to Genoscope and INRA's scaffolds and gene models.
Summary statistics for the Tuber aestivum v1.0 release are
below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 144.72 |
| Sequencing read coverage depth | ?? |
| # of contigs | 7613 |
| # of scaffolds | 3244 |
| # of scaffolds >= 2Kbp | 3242 |
| Scaffold N50 | 102 |
| Scaffold L50 (Mbp) | 0.44 |
| # of gaps | 4369 |
| % of scaffold length in gaps | 9.1% |
| Three largest Scaffolds (Mbp) | 1.95, 1.86, 1.69 |
| Gene Models | INRA_gene_models | |
| length (bp) of: | average | median |
| gene | 2206 | 1839 |
| transcript | 1931 | 1634 |
| exon | 507 | 316 |
| intron | 100 | 64 |
| description: | ||
| protein length (aa) | 455 | 362 |
| exons per gene | 3.81 | 3 |
| # of gene models | 9344 |
Collaborators
- DOE Joint Genome Institute
- Francis Martin at MycorWeb
- Annegret Kohler at MycorWeb
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Murat C, Payen T, Noel B, Kuo A, Morin E, Chen J, Kohler A, Krizsán K, Balestrini R, Da Silva C, Montanini B, Hainaut M, Levati E, Barry KW, Belfiori B, Cichocki N, Clum A, Dockter RB, Fauchery L, Guy J, Iotti M, Le Tacon F, Lindquist EA, Lipzen A, Malagnac F, Mello A, Molinier V, Miyauchi S, Poulain J, Riccioni C, Rubini A, Sitrit Y, Splivallo R, Traeger S, Wang M, Žifčáková L, Wipf D, Zambonelli A, Paolocci F, Nowrousian M, Ottonello S, Baldrian P, Spatafora JW, Henrissat B, Nagy LG, Aury JM, Wincker P, Grigoriev IV, Bonfante P, Martin FM
Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle.
Nat Ecol Evol. 2018 Dec;2(12):1956-1965. doi: 10.1038/s41559-018-0710-4
Murat C, Payen T, Noel B, Kuo A, Morin E, Chen J, Kohler A, Krizsán K, Balestrini R, Da Silva C, Montanini B, Hainaut M, Levati E, Barry KW, Belfiori B, Cichocki N, Clum A, Dockter RB, Fauchery L, Guy J, Iotti M, Le Tacon F, Lindquist EA, Lipzen A, Malagnac F, Mello A, Molinier V, Miyauchi S, Poulain J, Riccioni C, Rubini A, Sitrit Y, Splivallo R, Traeger S, Wang M, Žifčáková L, Wipf D, Zambonelli A, Paolocci F, Nowrousian M, Ottonello S, Baldrian P, Spatafora JW, Henrissat B, Nagy LG, Aury JM, Wincker P, Grigoriev IV, Bonfante P, Martin FM
Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle.
Nat Ecol Evol. 2018 Dec;2(12):1956-1965. doi: 10.1038/s41559-018-0710-4
Funding
This project was not sequenced at the JGI.
