Info • Tuber borchii Tbo3840 v1.0

Status

(June 2016) The Tuber borchii Tbo3840 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Rnnotator.

Summary statistics for the Tuber borchii Tbo3840 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 97.18
Sequencing read coverage depth 97x
# of contigs 969
# of scaffolds 969
# of scaffolds >= 2Kbp 959
Scaffold N50 155
Scaffold L50 (Mbp) 0.19
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.74, 0.67, 0.66


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters JGI Rnnotator contigs 44633 41559 93.1%
Ests JGI RNA-Seq 182178440 167979410 92.2%
Ests NCBI ESTs 3301 2642 80.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1521 1241
transcript 1309 1035
exon 386 241
intron 90 64
description:
protein length (aa) 379 289
exons per gene 3.40 3
# of gene models 12346


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Murat C, Kuo A, Barry KW, Clum A, Dockter RB, Fauchery L, Iotti M, Kohler A, LaButti K, Lindquist EA, Lipzen A, Morin E, Wang M, Grigoriev IV, Zambonelli A, Martin FM
Draft Genome Sequence of Tuber borchii Vittad., a Whitish Edible Truffle.
Genome Announc. 2018 Jun 21;6(25):. doi: 10.1128/genomeA.00537-18

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.