Info • Tulasnella calospora UAMH 9824 v1.0

Status

[September 2017] The Tulasnella calospora UAMH 9824 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Tulasnella calospora UAMH 9824 is likely a polymorphic dikaryon, and this is reflected in an assembly and annotation with significant separation of alleles. 332 of the 367 scaffolds are very similar to larger scaffolds and are predicted to constitute an alternate or secondary haplotype. To represent these primary and secondary haplotypes in the Portal, we have created 'primary alleles' and 'secondary alleles' gene model tracks, comprising the models found on each haplotype. The goal of the GeneCatalog (GC) is to produce a non-redundant set of models which captures the full functional repertiore of the genome, and so the few secondary alleles that are unique were included in the GC, while all others were not.




Summary statistics for the Tulasnella calospora UAMH 9824 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 70.37
Sequencing read coverage depth 79.8x
# of contigs 367
# of scaffolds 367
# of scaffolds >= 2Kbp 366
Scaffold N50 11
Scaffold L50 (Mbp) 2.58
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.48, 3.57, 3.38


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 57538 52657 91.5%
Ests est.fasta 154576053 153288068 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1713 1471
transcript 1366 1152
exon 242 154
intron 77 64
description:
protein length (aa) 401 327
exons per gene 5.64 5
# of gene models 17081


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.