Status
The Ulva mutabilis Føyn genome assembly and gene models have not been determined by the JGI, but were downloaded from ORCAE on September 29, 2019. Please note that this copy of the genome is not maintained by ORCAE and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.
Summary statistics for the Ulva mutabilis Føyn
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 98.48 |
| Sequencing read coverage depth | |
| # of contigs | 377 |
| # of scaffolds | 318 |
| # of scaffolds >= 2Kbp | 316 |
| Scaffold N50 | 46 |
| Scaffold L50 (Mbp) | 0.60 |
| # of gaps | 59 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 3.62, 2.05, 1.87 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 2888 | 2118 |
| transcript | 1468 | 1107 |
| exon | 303 | 233 |
| intron | 372 | 261 |
| description: | ||
| protein length (aa) | 489 | 369 |
| exons per gene | 4.84 | 4 |
| # of gene models | 12920 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
De Clerck O, Kao SM, Bogaert KA, Blomme J, Foflonker F, Kwantes M, Vancaester E, Vanderstraeten L, Aydogdu E, Boesger J, Califano G, Charrier B, Clewes R, Del Cortona A, D'Hondt S, Fernandez-Pozo N, Gachon CM, Hanikenne M, Lattermann L, Leliaert F, Liu X, Maggs CA, Popper ZA, Raven JA, Van Bel M, Wilhelmsson PKI, Bhattacharya D, Coates JC, Rensing SA, Van Der Straeten D, Vardi A, Sterck L, Vandepoele K, Van de Peer Y, Wichard T, Bothwell JH
Insights into the Evolution of Multicellularity from the Sea Lettuce Genome.
Curr Biol. 2018 Sep 24;28(18):2921-2933.e5. doi: 10.1016/j.cub.2018.08.015
De Clerck O, Kao SM, Bogaert KA, Blomme J, Foflonker F, Kwantes M, Vancaester E, Vanderstraeten L, Aydogdu E, Boesger J, Califano G, Charrier B, Clewes R, Del Cortona A, D'Hondt S, Fernandez-Pozo N, Gachon CM, Hanikenne M, Lattermann L, Leliaert F, Liu X, Maggs CA, Popper ZA, Raven JA, Van Bel M, Wilhelmsson PKI, Bhattacharya D, Coates JC, Rensing SA, Van Der Straeten D, Vardi A, Sterck L, Vandepoele K, Van de Peer Y, Wichard T, Bothwell JH
Insights into the Evolution of Multicellularity from the Sea Lettuce Genome.
Curr Biol. 2018 Sep 24;28(18):2921-2933.e5. doi: 10.1016/j.cub.2018.08.015
Links
- JGI Algae EcoGroup Portal
- JGI PhyloGroup Portals: Archaeplastida Viridiplantae Chlorophyta Ulvophyceae
Funding
This project was not sequenced at the JGI.
