Info • Ulva mutabilis Foyn

Status

The Ulva mutabilis Føyn genome assembly and gene models have not been determined by the JGI, but were downloaded from ORCAE on September 29, 2019. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds and 5) unsupported short models. This resulted in the removal of 1854 models from U. mutabilis and generation of the FilteredModels1 (GeneCatalog) gene track. All published models are available in the ExternalModels track. Please note that this copy of the genome is not maintained by ORCAE and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Genome Assembly
Genome Assembly size (Mbp) 98.48
# of contigs 377
# of scaffolds 318
# of scaffolds >= 2Kbp 316
Scaffold N50 46
Scaffold L50 (Mbp) 0.60
# of gaps 59
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 3.62, 2.05, 1.87


Gene Models FilteredModels1
length (bp) of: average median
gene 3251 2467
transcript 1634 1263
exon 303 231
intron 371 262
description:
protein length (aa) 545 421
exons per gene 5.39 5
# of gene models 11066


Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.