Status
The Ulva mutabilis Føyn genome assembly and gene models have not been determined by the JGI, but were downloaded from ORCAE on September 29, 2019. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds and 5) unsupported short models. This resulted in the removal of 1854 models from U. mutabilis and generation of the FilteredModels1 (GeneCatalog) gene track. All published models are available in the ExternalModels track. Please note that this copy of the genome is not maintained by ORCAE and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.
Genome Assembly | |
Genome Assembly size (Mbp) | 98.48 |
# of contigs | 377 |
# of scaffolds | 318 |
# of scaffolds >= 2Kbp | 316 |
Scaffold N50 | 46 |
Scaffold L50 (Mbp) | 0.60 |
# of gaps | 59 |
% of scaffold length in gaps | 0.1% |
Three largest Scaffolds (Mbp) | 3.62, 2.05, 1.87 |
Gene Models | FilteredModels1 | |
length (bp) of: | average | median |
gene | 3251 | 2467 |
transcript | 1634 | 1263 |
exon | 303 | 231 |
intron | 371 | 262 |
description: | ||
protein length (aa) | 545 | 421 |
exons per gene | 5.39 | 5 |
# of gene models | 11066 |
Genome Reference(s)
De Clerck O, Kao SM, Bogaert KA, Blomme J, Foflonker F, Kwantes M, Vancaester E, Vanderstraeten L, Aydogdu E, Boesger J, Califano G, Charrier B, Clewes R, Del Cortona A, D'Hondt S, Fernandez-Pozo N, Gachon CM, Hanikenne M, Lattermann L, Leliaert F, Liu X, Maggs CA, Popper ZA, Raven JA, Van Bel M, Wilhelmsson PKI, Bhattacharya D, Coates JC, Rensing SA, Van Der Straeten D, Vardi A, Sterck L, Vandepoele K, Van de Peer Y, Wichard T, Bothwell JH
Insights into the Evolution of Multicellularity from the Sea Lettuce Genome.
Curr Biol. 2018 Sep 24;28(18):2921-2933.e5. doi: 10.1016/j.cub.2018.08.015
Links
- JGI EcoGroup Portals: Algae Seaweeds
- JGI PhyloGroup Portals: Archaeplastida Viridiplantae Chlorophyta Ulvophyceae