Status
This genome was sequenced by the Broad Institute. Please check their data use policies.
Summary statistics for the Uncinocarpus reesii UAMH 1704
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 22.33 |
| Sequencing read coverage depth | 5x |
| # of contigs | 582 |
| # of scaffolds | 44 |
| # of scaffolds >= 2Kbp | 6 |
| Scaffold N50 | 2 |
| Scaffold L50 (Mbp) | 5.23 |
| # of gaps | 538 |
| % of scaffold length in gaps | 0.8% |
| Three largest Scaffolds (Mbp) | 7.89, 5.23, 3.92 |
| Gene Models | BroadModels | |
| length (bp) of: | average | median |
| gene | 1638 | 1374 |
| transcript | 1437 | 1185 |
| exon | 465 | 256 |
| intron | 98 | 67 |
| description: | ||
| protein length (aa) | 479 | 395 |
| exons per gene | 3.09 | 3 |
| # of gene models | 7798 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Sharpton TJ, Stajich JE, Rounsley SD, Gardner MJ, Wortman JR, Jordar VS, Maiti R, Kodira CD, Neafsey DE, Zeng Q, Hung CY, McMahan C, Muszewska A, Grynberg M, Mandel MA, Kellner EM, Barker BM, Galgiani JN, Orbach MJ, Kirkland TN, Cole GT, Henn MR, Birren BW, Taylor JW
Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives.
Genome Res. 2009 Oct;19(10):1722-31. doi: 10.1101/gr.087551.108
Sharpton TJ, Stajich JE, Rounsley SD, Gardner MJ, Wortman JR, Jordar VS, Maiti R, Kodira CD, Neafsey DE, Zeng Q, Hung CY, McMahan C, Muszewska A, Grynberg M, Mandel MA, Kellner EM, Barker BM, Galgiani JN, Orbach MJ, Kirkland TN, Cole GT, Henn MR, Birren BW, Taylor JW
Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives.
Genome Res. 2009 Oct;19(10):1722-31. doi: 10.1101/gr.087551.108
Funding
This project was not sequenced at the JGI.
