Info • Undaria pinnatifida M23


The Undaria pinnatifida M23 genome sequence and gene models have not been determined by the JGI, but were downloaded from Shan et al. 2020 on July 14, 2020. Please note that this copy of the genome is not maintained by Shan et al. and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Summary statistics for the Undaria pinnatifida M23 release are below.
Genome Assembly
Genome Assembly size (Mbp) 511.28
Sequencing read coverage depth ~120X
# of contigs 618
# of scaffolds 114
# of scaffolds >= 2Kbp 84
Scaffold N50 12
Scaffold L50 (Mbp) 16.51
# of gaps 504
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 32.30, 29.17, 27.54

Gene Models ExternalModels
length (bp) of: average median
gene 14496 10534
transcript 2089 1652
exon 248 145
intron 1673 958
protein length (aa) 605 451
exons per gene 8.43 7
# of gene models 14300

Genome Reference(s)


This project was not sequenced at the JGI.