Status
The genome sequence and gene models of Ustilago maydis 521 were not determined by the Joint Genome Institute (JGI), but were provided by Gertrud Mannhaupt and Ulrich Güldener in collaboration with the group of Regine Kahmann in Nov 16, 2017. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Note that this is an updated annotation of the U. maydis version deposited in NCBI, which is also available in MycoCosm.
Summary statistics for the Ustilago maydis 521 release are
below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 19.66 |
| Sequencing read coverage depth | |
| # of contigs | 253 |
| # of scaffolds | 27 |
| # of scaffolds >= 2Kbp | 27 |
| Scaffold N50 | 7 |
| Scaffold L50 (Mbp) | 0.88 |
| # of gaps | 226 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 2.48, 1.88, 1.64 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1836 | 1506 |
| transcript | 1772 | 1461 |
| exon | 1235 | 867 |
| intron | 148 | 102 |
| description: | ||
| protein length (aa) | 591 | 487 |
| exons per gene | 1.44 | 1 |
| # of gene models | 6785 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Kämper J, Kahmann R, Bölker M, Ma LJ, Brefort T, Saville BJ, Banuett F, Kronstad JW, Gold SE, Müller O, Perlin MH, Wösten HA, de Vries R, Ruiz-Herrera J, Reynaga-Peña CG, Snetselaar K, McCann M, Pérez-MartÃn J, Feldbrügge M, Basse CW, Steinberg G, Ibeas JI, Holloman W, Guzman P, Farman M, Stajich JE, Sentandreu R, González-Prieto JM, Kennell JC, Molina L, Schirawski J, Mendoza-Mendoza A, Greilinger D, Münch K, Rössel N, Scherer M, Vranes M, Ladendorf O, Vincon V, Fuchs U, Sandrock B, Meng S, Ho EC, Cahill MJ, Boyce KJ, Klose J, Klosterman SJ, Deelstra HJ, Ortiz-Castellanos L, Li W, Sanchez-Alonso P, Schreier PH, Häuser-Hahn I, Vaupel M, Koopmann E, Friedrich G, Voss H, Schlüter T, Margolis J, Platt D, Swimmer C, Gnirke A, Chen F, Vysotskaia V, Mannhaupt G, Güldener U, Münsterkötter M, Haase D, Oesterheld M, Mewes HW, Mauceli EW, DeCaprio D, Wade CM, Butler J, Young S, Jaffe DB, Calvo S, Nusbaum C, Galagan J, Birren BW
Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis.
Nature. 2006 Nov 2;444(7115):97-101. doi: 10.1038/nature05248
Kämper J, Kahmann R, Bölker M, Ma LJ, Brefort T, Saville BJ, Banuett F, Kronstad JW, Gold SE, Müller O, Perlin MH, Wösten HA, de Vries R, Ruiz-Herrera J, Reynaga-Peña CG, Snetselaar K, McCann M, Pérez-MartÃn J, Feldbrügge M, Basse CW, Steinberg G, Ibeas JI, Holloman W, Guzman P, Farman M, Stajich JE, Sentandreu R, González-Prieto JM, Kennell JC, Molina L, Schirawski J, Mendoza-Mendoza A, Greilinger D, Münch K, Rössel N, Scherer M, Vranes M, Ladendorf O, Vincon V, Fuchs U, Sandrock B, Meng S, Ho EC, Cahill MJ, Boyce KJ, Klose J, Klosterman SJ, Deelstra HJ, Ortiz-Castellanos L, Li W, Sanchez-Alonso P, Schreier PH, Häuser-Hahn I, Vaupel M, Koopmann E, Friedrich G, Voss H, Schlüter T, Margolis J, Platt D, Swimmer C, Gnirke A, Chen F, Vysotskaia V, Mannhaupt G, Güldener U, Münsterkötter M, Haase D, Oesterheld M, Mewes HW, Mauceli EW, DeCaprio D, Wade CM, Butler J, Young S, Jaffe DB, Calvo S, Nusbaum C, Galagan J, Birren BW
Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis.
Nature. 2006 Nov 2;444(7115):97-101. doi: 10.1038/nature05248
Funding
This project was not sequenced at the JGI.
