Status
The genome sequence and gene prediction of Venturia effusa albino have not been determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on May 20, 2020. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.
Summary statistics for the Venturia effusa v1.0 release
are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 45.21 |
| Sequencing read coverage depth | 110x |
| # of contigs | 20 |
| # of scaffolds | 20 |
| # of scaffolds >= 2Kbp | 20 |
| Scaffold N50 | 8 |
| Scaffold L50 (Mbp) | 2.47 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 4.12, 2.93, 2.90 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1678 | 1377 |
| transcript | 1473 | 1221 |
| exon | 505 | 283 |
| intron | 109 | 57 |
| description: | ||
| protein length (aa) | 491 | 407 |
| exons per gene | 2.92 | 3 |
| # of gene models | 10820 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Winter DJ, Charlton ND, Krom N, Shiller J, Bock CH, Cox MP, Young CA
Chromosome-Level Reference Genome of Venturia effusa, Causative Agent of Pecan Scab.
Mol Plant Microbe Interact. 2020 Feb;33(2):149-152. doi: 10.1094/MPMI-08-19-0236-A
Winter DJ, Charlton ND, Krom N, Shiller J, Bock CH, Cox MP, Young CA
Chromosome-Level Reference Genome of Venturia effusa, Causative Agent of Pecan Scab.
Mol Plant Microbe Interact. 2020 Feb;33(2):149-152. doi: 10.1094/MPMI-08-19-0236-A
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Dothideomycetes Venturiales
- JGI EcoGroup Portals: Plant Pathogens
Funding
This project was not sequenced at the JGI.
