Info • Verticillium alfalfae VaMs.102

Status

This genome was sequenced by the Broad Institute. Please check their data use policies.

Summary statistics for the Verticillium alfalfae VaMs.102 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.83
Sequencing read coverage depth 4.08x
# of contigs 4147
# of scaffolds 26
# of scaffolds >= 2Kbp 26
Scaffold N50 6
Scaffold L50 (Mbp) 2.32
# of gaps 4121
% of scaffold length in gaps 7.7%
Three largest Scaffolds (Mbp) 4.78, 3.38, 2.97


Gene Models BroadModels
length (bp) of: average median
gene 1580 1333
transcript 1357 1128
exon 481 302
intron 124 71
description:
protein length (aa) 438 363
exons per gene 2.82 2
# of gene models 10221


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Klosterman SJ, Subbarao KV, Kang S, Veronese P, Gold SE, Thomma BP, Chen Z, Henrissat B, Lee YH, Park J, Garcia-Pedrajas MD, Barbara DJ, Anchieta A, de Jonge R, Santhanam P, Maruthachalam K, Atallah Z, Amyotte SG, Paz Z, Inderbitzin P, Hayes RJ, Heiman DI, Young S, Zeng Q, Engels R, Galagan J, Cuomo CA, Dobinson KF, Ma LJ
Comparative genomics yields insights into niche adaptation of plant vascular wilt pathogens.
PLoS Pathog. 2011 Jul;7(7):e1002137. doi: 10.1371/journal.ppat.1002137

Funding

This project was not sequenced at the JGI.