Info • Verticillium dahliae VdLs.17

Status

The genome of Verticillium dahliae was sequenced by the BROAD Institute. In order to allow comparative analyses with other fungi, a copy of the genome of V. dahliae is incorporated into MycoCosm. It was downloaded from the website of the BROAD Institute on May 20th, 2011.

Summary statistics for the Verticillium dahliae v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 33.83
Sequencing read coverage depth 7x
# of contigs 1562
# of scaffolds 52
# of scaffolds >= 2Kbp 52
Scaffold N50 9
Scaffold L50 (Mbp) 1.27
# of gaps 1510
% of scaffold length in gaps 2.7%
Three largest Scaffolds (Mbp) 2.67, 2.53, 2.21


Gene Models ExternalModels
length (bp) of: average median
gene 1677 1438
transcript 1495 1263
exon 531 309
intron 102 66
description:
protein length (aa) 474 395
exons per gene 2.82 2
# of gene models 10535


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Klosterman SJ, Subbarao KV, Kang S, Veronese P, Gold SE, Thomma BP, Chen Z, Henrissat B, Lee YH, Park J, Garcia-Pedrajas MD, Barbara DJ, Anchieta A, de Jonge R, Santhanam P, Maruthachalam K, Atallah Z, Amyotte SG, Paz Z, Inderbitzin P, Hayes RJ, Heiman DI, Young S, Zeng Q, Engels R, Galagan J, Cuomo CA, Dobinson KF, Ma LJ
Comparative genomics yields insights into niche adaptation of plant vascular wilt pathogens.
PLoS Pathog. 2011 Jul;7(7):e1002137. doi: 10.1371/journal.ppat.1002137

Funding

This project was not sequenced at the JGI.