Info • Vischeria strain C74

Status

The Vischeria C74 genome sequence and gene models were not determined by the Joint Genome Institute (JGI), but were downloaded from Figshare on Oct 26, 2022. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds, and 5) unsupported short models. This resulted in the removal of 105 models from Vischeria and the generation of the FilteredModels1 (GeneCatalog) gene track. All published models are available in the ExternalModels track. Please note that this copy of the genome is not maintained by Yang et al. and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Genome Assembly
Genome Assembly size (Mbp) 106.49
Sequencing read coverage depth
# of contigs 55
# of scaffolds 55
# of scaffolds >= 2Kbp 55
Scaffold N50 14
Scaffold L50 (Mbp) 3.09
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.59, 4.50, 4.45


Gene Models FilteredModels1
length (bp) of: average median
gene 3560 2470
transcript 1588 1194
exon 179 118
intron 253 149
description:
protein length (aa) 529 398
exons per gene 8.85 7
# of gene models 15625


Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.