Info • Xylariaceae sp. FL1272 v2.0

Status

[November 2019] The Xylariaceae sp. FL1272 v2.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Xylariaceae sp. FL1272 v2.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 50.25
Sequencing read coverage depth 125.86x
# of contigs 143
# of scaffolds 143
# of scaffolds >= 2Kbp 143
Scaffold N50 21
Scaffold L50 (Mbp) 0.72
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.51, 1.77, 1.71


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 51247 50551 98.6%
Ests est.fasta 130994113 129871747 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1946 1726
transcript 1762 1552
exon 585 366
intron 94 66
description:
protein length (aa) 466 388
exons per gene 3.01 3
# of gene models 13459


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.