Info • Xylariaceae sp. FL0594 v1.0

Status

[March 2019] The Xylariaceae sp. FL0594 genome was sequenced with Illumina, assembled with SPAdes v3.12.0, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Xylariaceae sp. FL0594 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.62
Sequencing read coverage depth 174.264941574x
# of contigs 603
# of scaffolds 563
# of scaffolds >= 2Kbp 470
Scaffold N50 56
Scaffold L50 (Mbp) 0.19
# of gaps 40
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.83, 0.58, 0.49


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 50347 48114 95.6%
Ests est.fasta 116442067 113964306 97.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 2072 1850
transcript 1865 1651
exon 612 379
intron 103 76
description:
protein length (aa) 485 408
exons per gene 3.05 3
# of gene models 10461


Collaborators

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.