Info • Xylaria sp. FL0933 v1.0

Status

[March 2019] This genome was sequenced with Illumina, assembled with SPAdes v3.12.0, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Xylaria sp. FL0933 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 46.49
Sequencing read coverage depth 127.712530991x
# of contigs 517
# of scaffolds 505
# of scaffolds >= 2Kbp 400
Scaffold N50 28
Scaffold L50 (Mbp) 0.46
# of gaps 12
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.78, 1.49, 1.41


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 44864 43388 96.7%
Ests est.fasta 103840106 101801611 98.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 2063 1820
transcript 1861 1637
exon 595 376
intron 97 69
description:
protein length (aa) 488 409
exons per gene 3.13 3
# of gene models 11854


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.