Info • Xylaria sp. FL1042 v1.0

Status

[March 2019] This genome was sequenced with Illumina, assembled with SPAdes v3.12.0, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Xylaria sp. FL1042 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 56.98
Sequencing read coverage depth 105.725657303x
# of contigs 2508
# of scaffolds 2489
# of scaffolds >= 2Kbp 1872
Scaffold N50 112
Scaffold L50 (Mbp) 0.15
# of gaps 19
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.82, 0.68, 0.63


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 42683 40371 94.6%
Ests est.fasta 91401770 89542860 98.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 2043 1816
transcript 1838 1618
exon 583 362
intron 97 69
description:
protein length (aa) 484 406
exons per gene 3.15 3
# of gene models 12101


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.