Info • Xylariomycetidae sp. FL2044 v1.0

Status

[March 2019] The Xylariomycetidae sp. FL2044 genome was sequenced with PacBio, assembled with Falcon v1.8.8, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Xylariomycetidae sp FL2044 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 47.51
Sequencing read coverage depth 562.99x
# of contigs 111
# of scaffolds 111
# of scaffolds >= 2Kbp 110
Scaffold N50 16
Scaffold L50 (Mbp) 1.08
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.13, 1.98, 1.81


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 63529 62286 98.0%
Ests est.fasta 201641202 199983916 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1980 1766
transcript 1777 1575
exon 600 379
intron 105 73
description:
protein length (aa) 465 389
exons per gene 2.96 3
# of gene models 14033


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.