Info • Xylaria flabelliformis NC1011 v1.0

Status

[November 2018] The Xylaria flabelliformis NC1011 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Xylaria flabelliformis NC1011 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 41.61
Sequencing read coverage depth 243.01x
# of contigs 198
# of scaffolds 198
# of scaffolds >= 2Kbp 194
Scaffold N50 27
Scaffold L50 (Mbp) 0.46
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.50, 1.20, 1.16


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 45643 40951 89.7%
Ests est.fasta 138260941 134406371 97.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1907 1669
transcript 1719 1500
exon 550 339
intron 91 66
description:
protein length (aa) 485 404
exons per gene 3.13 3
# of gene models 12391


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.