Info • Xylaria cf. heliscus FL0509 v2.0

Status

[December 2019] The Xylaria cf. heliscus FL0509 v2.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Xylaria cf. heliscus v2.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 44.92
Sequencing read coverage depth 129.42x
# of contigs 72
# of scaffolds 72
# of scaffolds >= 2Kbp 72
Scaffold N50 11
Scaffold L50 (Mbp) 1.54
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.79, 2.61, 2.39


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 51923 50871 98.0%
Ests est.fasta 165872566 165094364 99.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 2040 1819
transcript 1838 1626
exon 586 365
intron 97 69
description:
protein length (aa) 486 408
exons per gene 3.14 3
# of gene models 12156


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.