Info • Xylaria venustula FL0490 v1.0

Status

[March 2019] This genome was sequenced with Illumina, assembled with SPAdes v3.12.0, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Xylaria venustula FL0490 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 50.83
Sequencing read coverage depth 117.840593002x
# of contigs 417
# of scaffolds 392
# of scaffolds >= 2Kbp 360
Scaffold N50 39
Scaffold L50 (Mbp) 0.43
# of gaps 25
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.25, 1.14, 1.06


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 52533 50546 96.2%
Ests est.fasta 102210938 100371236 98.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 2023 1795
transcript 1818 1605
exon 580 357
intron 98 68
description:
protein length (aa) 479 402
exons per gene 3.14 3
# of gene models 12428


Collaborators

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.