Status
[Feb 2013]
The genome sequence and gene prediction of Yarrowia lipolytica were not determined by the JGI, but was downloaded from Génolevures [Release Version: 2012/02/09]. Please note that this copy of the genome is not maintained by Génolevures and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the known and predicted proteins.
Summary statistics for the Yarrowia lipolytica release are
below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 20.50 |
| Sequencing read coverage depth | ? |
| # of contigs | 6 |
| # of scaffolds | 6 |
| # of scaffolds >= 2Kbp | 6 |
| Scaffold N50 | 3 |
| Scaffold L50 (Mbp) | 3.63 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 4.22, 4.00, 3.63 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1510 | 1245 |
| transcript | 1464 | 1212 |
| exon | 1255 | 1059 |
| intron | 277 | 208 |
| description: | ||
| protein length (aa) | 488 | 404 |
| exons per gene | 1.17 | 1 |
| # of gene models | 6447 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Dujon B, Sherman D, Fischer G, Durrens P, Casaregola S, Lafontaine I, De Montigny J, Marck C, Neuvéglise C, Talla E, Goffard N, Frangeul L, Aigle M, Anthouard V, Babour A, Barbe V, Barnay S, Blanchin S, Beckerich JM, Beyne E, Bleykasten C, Boisramé A, Boyer J, Cattolico L, Confanioleri F, De Daruvar A, Despons L, Fabre E, Fairhead C, Ferry-Dumazet H, Groppi A, Hantraye F, Hennequin C, Jauniaux N, Joyet P, Kachouri R, Kerrest A, Koszul R, Lemaire M, Lesur I, Ma L, Muller H, Nicaud JM, Nikolski M, Oztas S, Ozier-Kalogeropoulos O, Pellenz S, Potier S, Richard GF, Straub ML, Suleau A, Swennen D, Tekaia F, Wésolowski-Louvel M, Westhof E, Wirth B, Zeniou-Meyer M, Zivanovic I, Bolotin-Fukuhara M, Thierry A, Bouchier C, Caudron B, Scarpelli C, Gaillardin C, Weissenbach J, Wincker P, Souciet JL
Genome evolution in yeasts.
Nature. 2004 Jul 1;430(6995):35-44. doi: 10.1038/nature02579
Dujon B, Sherman D, Fischer G, Durrens P, Casaregola S, Lafontaine I, De Montigny J, Marck C, Neuvéglise C, Talla E, Goffard N, Frangeul L, Aigle M, Anthouard V, Babour A, Barbe V, Barnay S, Blanchin S, Beckerich JM, Beyne E, Bleykasten C, Boisramé A, Boyer J, Cattolico L, Confanioleri F, De Daruvar A, Despons L, Fabre E, Fairhead C, Ferry-Dumazet H, Groppi A, Hantraye F, Hennequin C, Jauniaux N, Joyet P, Kachouri R, Kerrest A, Koszul R, Lemaire M, Lesur I, Ma L, Muller H, Nicaud JM, Nikolski M, Oztas S, Ozier-Kalogeropoulos O, Pellenz S, Potier S, Richard GF, Straub ML, Suleau A, Swennen D, Tekaia F, Wésolowski-Louvel M, Westhof E, Wirth B, Zeniou-Meyer M, Zivanovic I, Bolotin-Fukuhara M, Thierry A, Bouchier C, Caudron B, Scarpelli C, Gaillardin C, Weissenbach J, Wincker P, Souciet JL
Genome evolution in yeasts.
Nature. 2004 Jul 1;430(6995):35-44. doi: 10.1038/nature02579
Links
Funding
This project was not sequenced at the JGI.
