Info • Yarrowia lipolytica YB419 v1.0

Status

[May 2018] The Yarrowia lipolytica YB419 genome was sequenced with Illumina HiSeq-2500, assembled with SPAdes version 3.11.1, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Yarrowia lipolytica YB419 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 20.14
Sequencing read coverage depth 739.96x
# of contigs 370
# of scaffolds 355
# of scaffolds >= 2Kbp 333
Scaffold N50 57
Scaffold L50 (Mbp) 0.11
# of gaps 15
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.47, 0.28, 0.28


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 16328 15626 95.7%
Ests est.fasta 151880071 151231032 99.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1666 1430
transcript 1588 1375
exon 1210 1066
intron 252 145
description:
protein length (aa) 458 385
exons per gene 1.31 1
# of gene models 6751


Collaborators

Cong Trinh, University of Tennessee, Knoxville

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Walker C, Ryu S, Na H, Zane M, LaButti K, Lipzen A, Haridas S, Barry K, Grigoriev IV, Quarterman J, Slininger P, Dien B, Trinh CT
Draft Genome Assemblies of Five Robust Yarrowia lipolytica Strains Exhibiting High Lipid Production, Pentose Sugar Utilization, and Sugar Alcohol Secretion from Undetoxified Lignocellulosic Biomass Hydrolysates.
Microbiol Resour Announc. 2018 Sep;7(12):. doi: 10.1128/MRA.01040-18

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.