Info • Yarrowia lipolytica YB420 v1.0

Status

[May 2018] The Yarrowia lipolytica YB420 genome was sequenced with Illumina HiSeq-2500, assembled with SPAdes version 3.11.1, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Yarrowia lipolytica YB420 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 20.20
Sequencing read coverage depth 259.10x
# of contigs 369
# of scaffolds 355
# of scaffolds >= 2Kbp 340
Scaffold N50 54
Scaffold L50 (Mbp) 0.11
# of gaps 14
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.46, 0.39, 0.37


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 16328 15638 95.8%
Ests est.fasta 151880071 151411377 99.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1665 1430
transcript 1588 1376
exon 1218 1071
intron 255 146
description:
protein length (aa) 458 384
exons per gene 1.30 1
# of gene models 6772


Collaborators

Cong Trinh, University of Tennessee, Knoxville

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.