Status
The genome of Zasmidium cellare ATCC 36951 was sequenced using Illumina technology and assembled using AllPaths-LG (release version R41043). No ESTs are available for this genome.
Summary statistics for the Zasmidium cellare ATCC 36951
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 38.25 |
| Sequencing read coverage depth | 143.7x |
| # of contigs | 365 |
| # of scaffolds | 267 |
| # of scaffolds >= 2Kbp | 186 |
| Scaffold N50 | 19 |
| Scaffold L50 (Mbp) | 0.68 |
| # of gaps | 98 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 2.32, 1.85, 1.32 |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1476 | 1251 |
| transcript | 1349 | 1137 |
| exon | 539 | 304 |
| intron | 86 | 58 |
| description: | ||
| protein length (aa) | 450 | 379 |
| exons per gene | 2.50 | 2 |
| # of gene models | 16015 |
Collaborators
- Stephen Goodwin, Purdue University
- Scott Baker, PNNL
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Haridas S, Albert R, Binder M, Bloem J, LaButti K, Salamov A, Andreopoulos B, Baker SE, Barry K, Bills G, Bluhm BH, Cannon C, Castanera R, Culley DE, Daum C, Ezra D, González JB, Henrissat B, Kuo A, Liang C, Lipzen A, Lutzoni F, Magnuson J, Mondo SJ, Nolan M, Ohm RA, Pangilinan J, Park HJ, RamÃrez L, Alfaro M, Sun H, Tritt A, Yoshinaga Y, Zwiers LH, Turgeon BG, Goodwin SB, Spatafora JW, Crous PW, Grigoriev IV
101 Dothideomycetes genomes: A test case for predicting lifestyles and emergence of pathogens.
Stud Mycol. 2020 Jun;96():141-153. doi: 10.1016/j.simyco.2020.01.003
Haridas S, Albert R, Binder M, Bloem J, LaButti K, Salamov A, Andreopoulos B, Baker SE, Barry K, Bills G, Bluhm BH, Cannon C, Castanera R, Culley DE, Daum C, Ezra D, González JB, Henrissat B, Kuo A, Liang C, Lipzen A, Lutzoni F, Magnuson J, Mondo SJ, Nolan M, Ohm RA, Pangilinan J, Park HJ, RamÃrez L, Alfaro M, Sun H, Tritt A, Yoshinaga Y, Zwiers LH, Turgeon BG, Goodwin SB, Spatafora JW, Crous PW, Grigoriev IV
101 Dothideomycetes genomes: A test case for predicting lifestyles and emergence of pathogens.
Stud Mycol. 2020 Jun;96():141-153. doi: 10.1016/j.simyco.2020.01.003
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
