Info • Zygnema circumcarinatum UTEX 1560

Status

The Zygnema circumcarinatum UTEX 1560 genome assembly and gene models have not been determined by the JGI, but were downloaded from https://bcb.unl.edu/Zygnema_4genomes/ (Yanbin Yin Lab, University of Nebraska - Lincoln) on January 24, 2023. Please note that this copy of the genome is not maintained by the Yin Lab and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Please note: the full set of published MAKER-P models are included as the ExternalsModels gene track. Prior v1 gene models were mapped to this v2 assembly. The v1 assembly and annotation are available separately in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 67.28
Sequencing read coverage depth 103.4x
# of contigs 4336
# of scaffolds 514
# of scaffolds >= 2Kbp 200
Scaffold N50 7
Scaffold L50 (Mbp) 3.79
# of gaps 3822
% of scaffold length in gaps 2.3%
Three largest Scaffolds (Mbp) 8.43, 4.99, 4.79


Gene Models FilteredModels1
length (bp) of: average median
gene 4016 3138
transcript 1860 1485
exon 253 141
intron 342 255
description:
protein length (aa) 491 370
exons per gene 7.35 6
# of gene models 12436


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.