Info • Zygnema circumcarinatum SAG 698-1b


The Zygnema circumcarinatum SAG 698-1b genome assembly and gene models have not been determined by the JGI, but were downloaded from (Yanbin Yin Lab, University of Nebraska - Lincoln) on January 24, 2023. Please note that this copy of the genome is not maintained by the Yin Lab and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Please note: the full set of published MAKER-P models are included as the ExternalsModels gene track.

Genome Assembly
Genome Assembly size (Mbp) 71.00
Sequencing read coverage depth 466.14x
# of contigs 534
# of scaffolds 90
# of scaffolds >= 2Kbp 90
Scaffold N50 7
Scaffold L50 (Mbp) 3.96
# of gaps 444
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 8.66, 5.17, 5.00

Gene Models FilteredModels1
length (bp) of: average median
gene 4914 4166
transcript 2436 2137
exon 291 150
intron 339 257
protein length (aa) 519 417
exons per gene 8.36 7
# of gene models 10678

Genome Reference(s)


This project was not sequenced at the JGI.