Status
The Mucor heterogamus NRRL 1489 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline.
Summary statistics for the Mucor heterogamus NRRL 1489
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 54.49 |
| Sequencing read coverage depth | 285.03x |
| # of contigs | 1219 |
| # of scaffolds | 1219 |
| # of scaffolds >= 2Kbp | 1183 |
| Scaffold N50 | 109 |
| Scaffold L50 (Mbp) | 0.12 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.91, 0.77, 0.71 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 40755 | 36488 | 89.5% |
| Ests | est.fasta | 144827003 | 139716188 | 96.5% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1550 | 1300 |
| transcript | 1225 | 1006 |
| exon | 259 | 162 |
| intron | 89 | 68 |
| description: | ||
| protein length (aa) | 366 | 288 |
| exons per gene | 4.73 | 4 |
| # of gene models | 14998 |
Collaborators
Joey Spatafora, Oregon State, Oregon
Jason Stajich, UC Riverside, California
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
