Info • Zymoseptoria ardabiliae STIR04_1.1.1

Status

Zymoseptoria ardabiliae was not sequenced at the JGI. This genome was obtained from Eva Holtgrewe Stukenbrock at the Christian-Albrechts University of Kiel and Max Planck Institute for Evolutionary Biology. This copy of the genome is not maintained by the authour and is therefore not automatically updated.

Summary statistics for the Zymoseptoria ardabiliae v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 31.55
Sequencing read coverage depth 1x
# of contigs 3210
# of scaffolds 868
# of scaffolds >= 2Kbp 646
Scaffold N50 71
Scaffold L50 (Mbp) 0.13
# of gaps 2342
% of scaffold length in gaps 1.8%
Three largest Scaffolds (Mbp) 0.54, 0.50, 0.40


Gene Models ExternalModels
length (bp) of: average median
gene 1586 1302
transcript 1446 1185
exon 595 304
intron 100 60
description:
protein length (aa) 482 395
exons per gene 2.43 2
# of gene models 10788


Collaborators

Eva H. Stukenbrock at the Christian-Albrechts University of Kiel and Max Planck Institute for Evolutionary Biology.

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Stukenbrock EH, Christiansen FB, Hansen TT, Dutheil JY, Schierup MH
Fusion of two divergent fungal individuals led to the recent emergence of a unique widespread pathogen species.
Proc Natl Acad Sci U S A. 2012 Jul 3;109(27):10954-9. doi: 10.1073/pnas.1201403109

Stukenbrock EH, Bataillon T, Dutheil JY, Hansen TT, Li R, Zala M, McDonald BA, Wang J, Schierup MH
The making of a new pathogen: insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species.
Genome Res. 2011 Dec;21(12):2157-66. doi: 10.1101/gr.118851.110

Funding

This project was not sequenced at the JGI.