Status
The genome sequence and gene models of Blastocystis hominis Singapore isolate B (sub-type 7) were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on October 20, 2017. In order to allow comparative analyses with other heterokont genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Summary statistics for the Blastocystis hominis Singapore
isolate B (sub-type 7) release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 18.82 |
| Sequencing read coverage depth | |
| # of contigs | 147 |
| # of scaffolds | 54 |
| # of scaffolds >= 2Kbp | 54 |
| Scaffold N50 | 7 |
| Scaffold L50 (Mbp) | 0.90 |
| # of gaps | 93 |
| % of scaffold length in gaps | 0.4% |
| Three largest Scaffolds (Mbp) | 1.97, 1.87, 1.46 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1296 | 1011 |
| transcript | 1143 | 908 |
| exon | 247 | 129 |
| intron | 44 | 32 |
| description: | ||
| protein length (aa) | 359 | 284 |
| exons per gene | 4.64 | 4 |
| # of gene models | 6020 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Denoeud F, Roussel M, Noel B, Wawrzyniak I, Da Silva C, Diogon M, Viscogliosi E, Brochier-Armanet C, Couloux A, Poulain J, Segurens B, Anthouard V, Texier C, Blot N, Poirier P, Ng GC, Tan KS, Artiguenave F, Jaillon O, Aury JM, Delbac F, Wincker P, Vivarès CP, El Alaoui H
Genome sequence of the stramenopile Blastocystis, a human anaerobic parasite.
Genome Biol. 2011;12(3):R29. doi: 10.1186/gb-2011-12-3-r29
Denoeud F, Roussel M, Noel B, Wawrzyniak I, Da Silva C, Diogon M, Viscogliosi E, Brochier-Armanet C, Couloux A, Poulain J, Segurens B, Anthouard V, Texier C, Blot N, Poirier P, Ng GC, Tan KS, Artiguenave F, Jaillon O, Aury JM, Delbac F, Wincker P, Vivarès CP, El Alaoui H
Genome sequence of the stramenopile Blastocystis, a human anaerobic parasite.
Genome Biol. 2011;12(3):R29. doi: 10.1186/gb-2011-12-3-r29
Funding
This project was not sequenced at the JGI.
