Status
The Chara braunii S276 genome sequence and gene models have not been determined by the JGI, but were downloaded from ORCAE on September 23, 2019. Please note that this copy of the genome is not maintained by ORCAE and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.
Summary statistics for the Chara braunii S276 release are
below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 1750.99 |
| Sequencing read coverage depth | |
| # of contigs | 195435 |
| # of scaffolds | 11427 |
| # of scaffolds >= 2Kbp | 5979 |
| Scaffold N50 | 234 |
| Scaffold L50 (Mbp) | 2.26 |
| # of gaps | 184008 |
| % of scaffold length in gaps | 18.3% |
| Three largest Scaffolds (Mbp) | 14.23, 10.86, 10.46 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 16622 | 4283 |
| transcript | 2598 | 2110 |
| exon | 720 | 457 |
| intron | 5374 | 2061 |
| description: | ||
| protein length (aa) | 659 | 500 |
| exons per gene | 3.61 | 2 |
| # of gene models | 35672 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Nishiyama T, Sakayama H, de Vries J, Buschmann H, Saint-Marcoux D, Ullrich KK, Haas FB, Vanderstraeten L, Becker D, Lang D, Vosolsobě S, Rombauts S, Wilhelmsson PKI, Janitza P, Kern R, Heyl A, Rümpler F, Villalobos LIAC, Clay JM, Skokan R, Toyoda A, Suzuki Y, Kagoshima H, Schijlen E, Tajeshwar N, Catarino B, Hetherington AJ, Saltykova A, Bonnot C, Breuninger H, Symeonidi A, Radhakrishnan GV, Van Nieuwerburgh F, Deforce D, Chang C, Karol KG, Hedrich R, Ulvskov P, Glöckner G, Delwiche CF, Petrášek J, Van de Peer Y, Friml J, Beilby M, Dolan L, Kohara Y, Sugano S, Fujiyama A, Delaux PM, Quint M, Theißen G, Hagemann M, Harholt J, Dunand C, Zachgo S, Langdale J, Maumus F, Van Der Straeten D, Gould SB, Rensing SA
The Chara Genome: Secondary Complexity and Implications for Plant Terrestrialization.
Cell. 2018 Jul 12;174(2):448-464.e24. doi: 10.1016/j.cell.2018.06.033
Nishiyama T, Sakayama H, de Vries J, Buschmann H, Saint-Marcoux D, Ullrich KK, Haas FB, Vanderstraeten L, Becker D, Lang D, Vosolsobě S, Rombauts S, Wilhelmsson PKI, Janitza P, Kern R, Heyl A, Rümpler F, Villalobos LIAC, Clay JM, Skokan R, Toyoda A, Suzuki Y, Kagoshima H, Schijlen E, Tajeshwar N, Catarino B, Hetherington AJ, Saltykova A, Bonnot C, Breuninger H, Symeonidi A, Radhakrishnan GV, Van Nieuwerburgh F, Deforce D, Chang C, Karol KG, Hedrich R, Ulvskov P, Glöckner G, Delwiche CF, Petrášek J, Van de Peer Y, Friml J, Beilby M, Dolan L, Kohara Y, Sugano S, Fujiyama A, Delaux PM, Quint M, Theißen G, Hagemann M, Harholt J, Dunand C, Zachgo S, Langdale J, Maumus F, Van Der Straeten D, Gould SB, Rensing SA
The Chara Genome: Secondary Complexity and Implications for Plant Terrestrialization.
Cell. 2018 Jul 12;174(2):448-464.e24. doi: 10.1016/j.cell.2018.06.033
Links
- JGI Algae EcoGroup Portal
- JGI PhyloGroup Portals: Archaeplastida Viridiplantae Streptophyta Charophyceae
Funding
This project was not sequenced at the JGI.
