Status
The genome sequence and gene models of Ectocarpus siliculosus have not been determined by the JGI, but were downloaded from NCBI, on October 26, 2017. In order to allow comparative analyses with other genomes sequenced by the Joint Genome Institute, a copy of this genome is incorporated into the JGI Genome Portal. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Summary statistics for the Ectocarpus siliculosus release
are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 195.81 |
| Sequencing read coverage depth | 10x |
| # of contigs | 13000 |
| # of scaffolds | 1270 |
| # of scaffolds >= 2Kbp | 1270 |
| Scaffold N50 | 18 |
| Scaffold L50 (Mbp) | 3.94 |
| # of gaps | 11730 |
| % of scaffold length in gaps | 2.4% |
| Three largest Scaffolds (Mbp) | 9.29, 8.06, 7.31 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 6837 | 5395 |
| transcript | 1928 | 1533 |
| exon | 241 | 143 |
| intron | 705 | 533 |
| description: | ||
| protein length (aa) | 522 | 385 |
| exons per gene | 7.98 | 6 |
| # of gene models | 16271 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Cock JM, Sterck L, Rouzé P, Scornet D, Allen AE, Amoutzias G, Anthouard V, Artiguenave F, Aury JM, Badger JH, Beszteri B, Billiau K, Bonnet E, Bothwell JH, Bowler C, Boyen C, Brownlee C, Carrano CJ, Charrier B, Cho GY, Coelho SM, Collén J, Corre E, Da Silva C, Delage L, Delaroque N, Dittami SM, Doulbeau S, Elias M, Farnham G, Gachon CM, Gschloessl B, Heesch S, Jabbari K, Jubin C, Kawai H, Kimura K, Kloareg B, Küpper FC, Lang D, Le Bail A, Leblanc C, Lerouge P, Lohr M, Lopez PJ, Martens C, Maumus F, Michel G, Miranda-Saavedra D, Morales J, Moreau H, Motomura T, Nagasato C, Napoli CA, Nelson DR, Nyvall-Collén P, Peters AF, Pommier C, Potin P, Poulain J, Quesneville H, Read B, Rensing SA, Ritter A, Rousvoal S, Samanta M, Samson G, Schroeder DC, Ségurens B, Strittmatter M, Tonon T, Tregear JW, Valentin K, von Dassow P, Yamagishi T, Van de Peer Y, Wincker P
The Ectocarpus genome and the independent evolution of multicellularity in brown algae.
Nature. 2010 Jun 3;465(7298):617-21. doi: 10.1038/nature09016
Cock JM, Sterck L, Rouzé P, Scornet D, Allen AE, Amoutzias G, Anthouard V, Artiguenave F, Aury JM, Badger JH, Beszteri B, Billiau K, Bonnet E, Bothwell JH, Bowler C, Boyen C, Brownlee C, Carrano CJ, Charrier B, Cho GY, Coelho SM, Collén J, Corre E, Da Silva C, Delage L, Delaroque N, Dittami SM, Doulbeau S, Elias M, Farnham G, Gachon CM, Gschloessl B, Heesch S, Jabbari K, Jubin C, Kawai H, Kimura K, Kloareg B, Küpper FC, Lang D, Le Bail A, Leblanc C, Lerouge P, Lohr M, Lopez PJ, Martens C, Maumus F, Michel G, Miranda-Saavedra D, Morales J, Moreau H, Motomura T, Nagasato C, Napoli CA, Nelson DR, Nyvall-Collén P, Peters AF, Pommier C, Potin P, Poulain J, Quesneville H, Read B, Rensing SA, Ritter A, Rousvoal S, Samanta M, Samson G, Schroeder DC, Ségurens B, Strittmatter M, Tonon T, Tregear JW, Valentin K, von Dassow P, Yamagishi T, Van de Peer Y, Wincker P
The Ectocarpus genome and the independent evolution of multicellularity in brown algae.
Nature. 2010 Jun 3;465(7298):617-21. doi: 10.1038/nature09016
Funding
This project was not sequenced at the JGI.
