Status
[April 2024] The Epicoccum nigrum 411B_T16_1 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 35.44 |
| Sequencing read coverage depth | 178.75x |
| # of contigs | 315 |
| # of scaffolds | 300 |
| # of scaffolds >= 2Kbp | 271 |
| Scaffold N50 | 26 |
| Scaffold L50 (Mbp) | 0.46 |
| # of gaps | 15 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.61, 1.01, 0.90 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 38279 | 36968 | 96.6% |
| Ests | est.fasta | 225206227 | 217197904 | 96.4% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1887 | 1622 |
| transcript | 1738 | 1500 |
| exon | 634 | 398 |
| intron | 88 | 55 |
| description: | ||
| protein length (aa) | 492 | 407 |
| exons per gene | 2.74 | 2 |
| # of gene models | 12158 |
Collaborators
- Kathryn Bushley, USDA - Agricultural Research Service.
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Dothideomycetes Pleosporales
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
