Status
[July 2020] The genome of Metschnikowia reukaufii MR1 was sequenced and assembled by Manpreet Dhami and Tadashi Fukami. The JGI Fungal Annotation pipeline was used to predict genes and provide functional annotation.
Summary statistics for the Metschnikowia reukaufii MR1
v1.1 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 16.35 |
| Sequencing read coverage depth | 1x |
| # of contigs | 49 |
| # of scaffolds | 49 |
| # of scaffolds >= 2Kbp | 46 |
| Scaffold N50 | 3 |
| Scaffold L50 (Mbp) | 3.10 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 3.47, 3.39, 3.10 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 26525 | 9779 | 36.9% |
| Ests | est.fasta | 143162884 | 141660944 | 99.0% |
| Gene Models | FilteredModels2 | |
| length (bp) of: | average | median |
| gene | 1698 | 1457 |
| transcript | 1624 | 1401 |
| exon | 919 | 672 |
| intron | 98 | 43 |
| description: | ||
| protein length (aa) | 469 | 391 |
| exons per gene | 1.77 | 1 |
| # of gene models | 5989 |
Collaborators
- Tadashi Fukami, Stanford University, Stanford, California
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Saccharomycotina Saccharomycetales
Funding
This project was not sequenced at the JGI.
